1. Home
  2. Fish
  3. General

Aquarium Fish Fungus

Chewy Editorial
By Chewy Editorial
Updated
Apr. 30, 2025

Photo by Chewy

Like fin rot, fungus usually occurs when aquarium fish have been damaged or stressed by poor environmental conditions.

Identification


Fungus consists of fine white threads known as hyphae that pass through organic material. These hyphae form distinctive patches on fish that resemble cotton wool.

Mouth fungus (sometimes called columnaris) infections in aquarium fish are frequently confused with true fungal infections, but compared with fungal hyphae, the mouth fungus filaments are distinctly off-white to gray in color. Mouth fungus is caused by the bacterium Flavobacterium columnare and needs to be treated with an appropriate antibacterial or antibiotic medication.

Pathology


The fungi involved include species of Achylia and Saprolegia, often referred to collectively as water molds. These are likely present in most aquaria, breaking down organic material, such as feces, leaf litter and uneaten fish food.

Triggering Factors


Fungus spores are opportunistic and given the chance will invade most types of organic material, including living tissue. Fungus do not harm healthy aquarium fish because the mucus layer on the skin of a fish prevents the spores from infecting its living tissues.

However, if the fish’s mucus layer is damaged, fungus can quickly develop, particularly if the fish is living in dirty or otherwise unhealthy conditions. Rough handling is a common cause of fungus, but other common causes include fin nipping and fighting among fish. Any diseases that produce open wounds, such as ich, ulcers and hole-in-the-head disease, can lead to fungus.

Fungus is also associated with environmental stress, presumably because fish exhibit a weaker immune response when they are not properly taken care of. Chilling, poor water quality and inappropriate water chemistry are all common reasons why aquarium fish develop fungus. Keeping brackish water fish in freshwater conditions can also lead to fungal infections.

Treatment: Organic Dyes


Fungus needs to be treated promptly because it spreads rapidly, making the fish more vulnerable to secondary infections, such as fin rot. Even by itself, fungus will kill a fish if not remedied.

There are various proprietary medications available for treating fungus, usually based on organic dyes, such as malachite green. These medications are safe when used to treat most community fish, but they cannot be used in tanks containing certain delicate species, such as mormyrids and stingrays, and they are also toxic to snails, shrimps and other invertebrates.

Because fungus is not contagious, infected fish can be moved to a quarantine tank for treatment away from other livestock. This is the recommended approach for systems where some of the livestock are intolerant of antifungal medications.

Treatment: Tea-Tree Oil and Salt


Tea-tree oil is sometimes promoted as a less toxic anti-fungal medication. While it can work up to a point, tea-tree oil medication is inconsistent in effectiveness and may not be strong enough to treat severe fungal infections. Tea-tree oil is best considered as a preventative or precautionary measure — something to be used in situations where the fish are not yet sick, but they could be physically damaged because of fin nipping, fighting or handling.

Salt is not a reliable anti-fungal medication at the doses suitable for use with most community fish, though raising the salinity will help keep fungal infections at bay in tanks with livebearers and brackish fish. Even so, this therapeutic effect should be viewed within the context of providing these fish with better environmental conditions, in particular their needs for a basic pH, moderate to high levels of hardness and a level of salinity appropriate to the species in question.

Treating Fungus, Fin Rot and Mouth Fungus Simultaneously


Fungus, fin rot and mouth fungus are all opportunistic infections that can occur when fish are stressed or injured. In some situations, fish may contract more than one of these diseases, and distinguishing between them is often difficult.

Fortunately for the aquarist, there are numerous medications available that will treat all three maladies equally well. Combinations of formalin and malachite green are particularly popular and will treat a range of fungal and bacterial pathogens, but as stated earlier, such medications can be harmful to certain types of livestock, so they should always be used with care.

Fish Eggs


Besides fish, fungus will readily infect fish eggs, as well. Unfertilized eggs are usually infected first, with the hyphae gradually spreading onto healthy eggs, eventually killing the developing embryo. Some fish (notably cichlids) will remove any unfertilized eggs themselves, but otherwise the aquarist will need to remove them from the batch using a pipette. Unfertilized eggs are usually opaque in color and easily distinguished from healthy eggs.

The aquarist should also keep the fish aquarium as clean as possible, in part by providing good filtration and regular water changes but also by excluding things like gravel that might trap organic detritus, so that fungus cannot become established.

Prevention


Fungus is easily prevented. Avoiding injuries to your fish is essential, and this means minimizing handling and taking care not to mix specimens that might damage one another. Water quality should be monitored carefully, with particular regard to specific needs of livebearers and brackish species.

Cleanliness is an essential part of aquarium maintenance, and removing organic matter from the tank, particularly uneaten food and dead animals, is critical. Sifting the substrate gently to remove organic matter during weekly water changes is also important. The cleaner the aquarium, the less problematic fungus is likely to be.

Posted by: Chewy Editorial

Attributions


Chewy Editorial

Chewy Editorial

Related articles
  • Freshwater Aquarium Tank Cycling: How To Cycle a Fish Tank With Fish
    Freshwater Aquarium Tank Cycling: How To Cycle a Fish Tank With Fish

  • 14 Live Aquarium Plants To Beautify Your Fish Tank
    14 Live Aquarium Plants To Beautify Your Fish Tank

  • When To Use Sponge Filters for Fish Tanks
    When To Use Sponge Filters for Fish Tanks

  • Why Is My Fish Tank Cloudy?
    Why Is My Fish Tank Cloudy?
  • Our experts are available 24/7:We're here 24/7:
  • 1-800-672-4399
  • United States
  • About
  • Investor Relations
  • Affiliates
  • Jobs
  • FAQs
  • Learn
  • Give Back
  • Gift Cards
  • Sell on Chewy
Download iOS appDownload Android app
Go to ACHC pharmacy accreditationLegitscript ApprovedCompounding Pharmacy Approved
  • Copyright © 2025, Chewy, Inc.
  • Terms of Use
  • Privacy Policy (Updated Oct 8, 2024)
  • Interest-Based Ads
  • Accessibility
  • California Supply Chains Act
  • Vendor Compliance
Download phone image
Get the Chewy app
Download iOS appDownload Android app
We're here 24/7
1-800-672-4399
United States
Copyright © 2025 Chewy, Inc.
Terms-Privacy (Updated Oct 8, 2024)-Accessibility
California Supply Chains Act-Vendor Compliance
About-Investor Relations-Jobs-Learn
Give Back-Gift Cards-Sell on Chewy
Skip to searchSkip to main content
Not in the U.S?

Not shopping in the U.S. or plan on shipping to a Canadian address?

Continue to Canada site
Use App
24/7 HelpHelp
Get help from our experts 24/7
1-800-672-4399
    • Track Order
    • -
    • FAQs
    • -
    • Contact Info
    AccountAccount
    Sign InNew Customer? Start here
    • Account
    • Orders
    • Manage Autoship
    • Favorites
    • Buy Again
    • Prescriptions
    • Pet Portal
    • Connect with a Vet
    • Pet Insurance Dashboard
    • My Rescues
    • Create a Pet Profile
    CartCart
    Your cart is empty.
    Something missing? Sign in to see items you may have added from another computer or device.
    Not in the U.S?

    Not shopping in the U.S. or plan on shipping to a Canadian address?

    Continue to Canada site
    Use App
    24/7 Help
    Get help from our experts 24/7
    1-800-672-4399
      • Track Order
      • -
      • FAQs
      • -
      • Contact Info
      AccountAccount
      Sign InNew Customer? Start here
      • Account
      • Orders
      • Manage Autoship
      • Favorites
      • Buy Again
      • Prescriptions
      • Pet Portal
      • Connect with a Vet
      • Pet Insurance Dashboard
      • My Rescues
      • Create a Pet Profile
      CartCart
      Your cart is empty.
      Something missing? Sign in to see items you may have added from another computer or device.
      Food
      • Dry Food
      • Wet Food
      • Fresh Food & Toppers
      • Veterinary Diets
      • Shop by Health Condition
      • Puppy Food
      Treats
      • Bones, Bully Sticks & Naturals
      • Soft & Chewy Treats
      • Dental Treats
      • Biscuits & Cookies
      • Long-Lasting Chews
      • Jerky Treats
      • Freeze-Dried & Dehydrated
      Toys
      • Plush Toys
      • Chew Toys
      • Fetch Toys
      • Treat Dispensing Toys
      • Puzzle Toys
      • Rope & Tug Toys
      Supplies
      • Crates, Pens & Gates
      • Beds
      • Leashes, Collars & Harnesses
      • Bowls & Feeders
      • Clothing & Accessories
      • Carriers & Travel
      • Training & Behavior
      Dog DealsNew Dog SuppliesPet Parent SuppliesShop all Dog
      Grooming
      • Brushes & Combs
      • Shampoos & Conditioners
      • Grooming Tools
      • Paw & Nail Care
      • Ear Care
      • Skin Care
      Cleaning & Potty
      • Pee Pads & Diapers
      • Poop Bags & Scoopers
      • Cleaners & Stain Removers
      • Vacuums & Steam Cleaners
      Health & Pharmacy
      • Flea & Tick
      • Anxiety & Calming Care
      • Allergy & Itch Relief
      • Vitamins & Supplements
      • Heartworm & Dewormers
      • Pharmacy & Prescriptions
      • DNA Testing Kits
      Gift Cards
      Popular Brands
      Purina Pro Plan
      Hill's
      Blue Buffalo
      Frisco
      Royal Canin
      Bark
      Elevate your puppy's diet. Get adventure-ready with ORIJEN puppy. Shop now.
      Food
      • Wet Food
      • Dry Food
      • Everyday Favorites
      • Shop by Health Consideration
      • Veterinary Diets
      • Highest Quality Food
      • Food Toppers
      Litter
      • Clumping
      • Scented
      • Unscented
      • Natural
      • Lightweight
      Treats
      • Crunchy Treats
      • Lickable Treats
      • Soft & Chewy Treats
      • Dental Treats
      • Catnip & Cat Grass
      Toys
      • Interactive & Electronic Toys
      • Teasers & Wands
      • Balls & Chasers
      • Catnip Toys
      • Plush & Mice Toys
      Cat DealsPet Parent SuppliesShop all Cat
      Supplies
      • Litter Boxes & Accessories
      • Cat Tech & Smart Home
      • Beds
      • Carriers & Travel
      • Bowls & Feeders
      • Collars, Leashes & Harnesses
      • Grooming
      Trees & Scratchers
      • Trees & Condos
      • Scratchers & Scratching Posts
      • Wall Shelves
      • Window Perches
      Health & Pharmacy
      • Flea & Tick
      • Anxiety & Calming Care
      • Allergy & Itch Relief
      • Vitamins & Supplements
      • Urinary Tract & Kidneys
      • Pharmacy & Prescriptions
      • Test Kits
      Gift Cards
      Popular Brands
      Tiny Tiger
      Shop Blue Buffalo
      Shop litter robot
      Shop Temptations
      Shop Hill's Science Diet
      Shop Purina Pro Plan
      Help support their urinary health with Royal Canin Urinary nutrition. Shop now.
      Horse
      • Feed
      • Treats
      • Health & Wellness
      • Vitamins & Supplements
      • Fly Control
      • Prescription Medications
      • Vaccines
      Chicken
      • Feed
      • Treats
      • Nesting & Egg Supplies
      • Coops & Runs
      • Feeders, Waterers & Deicers
      Farm Animal
      • Cattle
      • Goat
      • Pig
      • Sheep
      • Llama & Alpaca
      Wild Bird & Wildlife
      • Wild Bird
      • Squirrel & Critter
      • Duck & Waterfowl
      • Deer
      Small Pet
      • Rabbit
      • Guinea Pig
      • Hamster
      • Ferret
      Pet Bird
      • Food
      • Treats
      • Toys & Perches
      • Litter & Nesting
      • Cages & Accessories
      Fish
      • Tanks & Aquariums
      • Food
      • Filters & Media
      • Decor & Substrate
      • Water Care
      Reptile & Amphibian
      • Live Feed
      • Food & Treats
      • Tanks & Terrariums
      • Heating & Lighting
      • Substrate & Bedding
      Gift Cards
      Popular Brands
      Shop Buckeye
      Shop Animed
      Shop Cosequin
      Chewy Chick Days deals. Save on feed & supplies for every life stage. Shop now.
      Prescriptions
      Order your pet's prescription items.
      How it works
      Shop all Pharmacy
      Health Services
      Chewy Vet Care
      Chat free with our vet team
      CarePlus Insurance & Wellness Plans
      Compounded Medications
      Choose from a variety of flavors, strengths, and forms for your pet or horse.
      Learn about compounding
      Dog
      • Flea & Tick
      • Heartworm
      • Pain Relief & Arthritis
      • Antibiotics
      • Allergy Relief
      • Anxiety & Calming
      • Ear & Eye Care
      • Diabetes Care & Insulin
      Cat
      • Flea & Tick
      • Dewormers & Parasiticides
      • Ear & Eye Care
      • Antibiotics
      • Allergy Relief
      • Urinary Tract & Kidneys
      • Pain Relief & Arthritis
      • Diabetes Care & Insulin
      Horse
      • Anti-inflammatory & Musculoskeletal
      • Vitamins & Electrolytes
      • Skin & Coat Care
      • Antibiotics
      • Metabolic & Endocrine
      • Allergy & Immune
      • Behavioral Support & Sedatives
      • Reproductive Care
      Expert Health Tips
      • PetMD
      Connect with a Vet
      Free chat or live-video advice from our licensed veterinary team.
      Learn more
      CarePlus Insurance & Wellness Plans
      Give your pet the best possible health coverage with wellness and insurance plans.
      Learn more
      Chewy Vet Care
      Exceptional in-person routine and urgent care from our compassionate veterinary teams.
      Schedule a visit
      Learn
      How We Give Back
      We've donated more than $100M in products to rescue animal centers.
      Learn more
      Donate to a Rescue
      You can help us make an impact by donating items to your local shelter.
      Find a Rescue
      Find Pets to Adopt
      Search thousands of pets from shelters and rescues in Chewy's network.
      Find Pets
      Join Our Network
      Join our network to access benefits and resources that’ll help more pets.
      Join Now
      Today's Deals